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This is a podcast about One Health the idea that the health of humans, animals, plants and the environment that we all share are intrinsically linked.
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Coming to you from the University of Texas Medical Branch and the Galveston National Laboratory.
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This is Infectious Science.
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Where enthusiasm for science?
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Is contagious.
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Welcome back to the Infectious Science podcast.
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We are excited to be back here.
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We have Christina and we have Camille.
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How are you guys doing?
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Doing well.
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We're hanging in there.
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Yeah, it's been a lot, it's been a big beginning of the year and we're coming to the close of our academic year, and so it's just everything's piling up, but we're getting there.
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Christina, since we're coming to the end of season number two of the Infectious Science Podcast, we've gained quite a few new followers.
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Let's do some introductions Like who are you, christina?
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I am Christina Rios.
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I am a second year medical student here at the UTMB School of Medicine.
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I am originally from San Antonio, texas, and I love my hometown very much.
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I am of Latino descent and I'm very proud of that.
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I'm a daughter, I'm a sister, I am an aspiring scientist and physician, and I love animals.
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Camille, who are you?
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Not as good of an intro as Christina.
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Yours is much better.
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I'm Camille Adu.
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I'm one of your co hosts.
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Thanks for listening in to Infectious Science.
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We appreciate all of our listeners and it's always great to hear from everyone who's been reaching out.
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I am coming to the end of my academic journey.
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I'm defending next month.
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So right now, as we record this it's January 31st 2025.
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2025.
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And I am very excited to defend next month.
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You must be so proud.
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I am so proud and also so stressed.
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But we're getting there and I'm really excited.
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When I am not in the lab or writing my dissertation, I'm reading a lot.
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I think my book count so far for the year is at 11 books, so we've restarted again.
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What was it last year?
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Oh, what did I finish out at?
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That is a great question.
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Oh, it was more than a hundred.
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Yeah.
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Let's see.
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What did I end up with for 2025?
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I'd just like to preface this by saying I think it was like January 2nd, that Camille sent Dennis and I a text that she had finished her first book of the year.
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That is true.
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Yes, last year was 127 books, and I yelled at my phone when I got the text because I wish I can finish a book in three months.
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Yeah, so last year I read 127 books.
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This year I'm hoping to do more, because I will not be spending as much time in grad school, so I'm excited to finish and start my work as a medical writer.
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Amazing, who are you?
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Yeah, dennis, you're looking very snazzy today.
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Reintroduce yourself, just for you guys.
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Hi, I'm Dennis Bent.
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I'm a professor of microbiology and immunology and I'm a German.
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I'm a man, a son, and what else did she say, christina?
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But I'm also very excited to talk about our guest today.
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So it's a great pleasure to introduce Dr Stephen Moldrum.
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He's an assistant professor in the Institute for Bioethics and Health Humanities and we've talked about having him on the show for quite some time because his research is really interested, and I'm really excited about this episode.
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Can't wait to get into it.
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Stephen, do you want to introduce yourself?
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Sure, yeah, thank you.
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Thank you so much for the introduction, dennis, and thanks so much for having me here on Infectious Science.
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I'm looking forward to the conversation we're going to have.
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My name is Stephen Moldrum I use he him pronouns, and, as Dennis said, I'm an assistant professor on the Institute for Bioethics and Health Humanities here at the University of Texas Medical Branch, where the Infectious Science podcast is recorded, and my research mainly exists in the field of science and technology studies, also public health ethics, and I'm an ethnographer, and so I use mainly qualitative methods and policy analysis methods, largely to study the politics of health data and also of infectious disease and the introduction of emerging technologies into infectious disease control, and I think that's what we'll mainly be talking about today, but I'll leave it there.
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I have a few other interests too.
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I mean sexual and gender minority health, mainly in regard to data practices, and I'll also say my research is mostly based in the US, but I also have done studies in global health policy, global media discourses, and also I have an ongoing project in Botswana related to tuberculosis.
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My PhD is in American culture the field is actually called American Studies, but Michigan has a strong identity of keeping the title American Culture and I also have a certificate of graduate studies in science, technology and society from Michigan.
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And I did a postdoctoral fellowship for two years at the University of California, irvine, in the Department of Anthropology, and then I came here and I've been at UTMB in the Institute for Bioethics and Health Humanities for three and a half years.
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Are you originally from Michigan?
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I am not originally from Michigan.
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I traveled around a lot growing up.
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I went to undergrad in Washington DC at the George Washington University.
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But yeah, lived many places growing up.
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Very cool.
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What is science and technology studies for our listeners?
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Yeah, science and technology studies is a field that emerged from the sociology and anthropology of science and technology in the 1970s.
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That was a heady time for the social sciences.
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There were a lot of challenges to, for example, institutional ways of knowing in the sciences from the social sciences that were really interested in using the tools of the social sciences to understand, for example, how the quote unquote hard sciences develop knowledge and then how knowledge takes on material form in society in the form of, for example, the formation of disciplines, the translation of scientific knowledge into policy, and so the field that's often talked about is this new upstart field, but it's 50 years old at this point.
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There are different branches of science and technology studies.
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Of those, I am primarily probably working in social studies of biomedicine and social studies of health and also infrastructure studies.
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We use the term in socio-technical a lot, so in science and technology studies, or STS as I will call it as we move along is always interested in thinking about how technology, the tools that scientists use, are co-mingled with the social and professional lives of scientists and how the operation and maintenance of things like large data infrastructures, which I think about a lot in the public health context, are always bound up with the people who are using and building and maintaining those systems and the technologies that they're using to do so.
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A lot of this has actually become diffused throughout the social sciences and the culture at this point, but it was a really radical notion in the 70s and 80s that you could, for example, treat the emergence and construction and use of scientific facts using the tools of like sociology and anthropology and science technology studies as many things, and I think we can continue to revisit it as we talk.
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Yeah.
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No, I think that's an excellent overview and I appreciate it as well because it's not something people tend to be like siloed in their field.
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So I always appreciate hearing what other people are doing and studying.
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So, in regards to like more specifically, what you're doing, when we first talked about this episode, we really talked about your work looking at pathogen genomics and pathogen phylogenetics, and so, before we get into that, I just wanted to quickly define them for our listeners.
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Pathogen genomics is the study of genetic material of microorganisms that cause disease.
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Pathogen phylogenetics is the study of how microorganisms evolve.
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It's often used in public health to track disease outbreaks and reveal transmission patterns.
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So, with those definitions out of the way, of course, if you have anything to add to those definitions, I want to hear it.
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But could you tell our listeners why pathogen genomics and pathogen phylogenetics matter, particularly right now, like in the present moment?
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Yeah, totally no.
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I think those are good definitions of pathogen genomics as a field.
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There are many things that are gathered under that signifier and pathogen phylogenetics being both like a method right that is used to track pathogen evolution but then also has specific applications in research and public health, whereas pathogen genomics isn't necessarily about pathogen evolution but can be used in, for example, tracing the emergence of in surveillance, for example, drug-resistant variants of pathogens or within an individual patient, clinical applications of genomics.
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To take a little bit of a step back in terms of how I got focused on studying this on studying this, my work initially was about the emergence of the application of digital infrastructures and public health programs in the United States, really starting in the period after 2009,.
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When there was a law passed it was called the High Tech Act.
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That was actually part of the 2009 American Recovery and Reinvestment Act, huge bill, spending bill that digitized the US healthcare system.
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And when I say I'm interested in emerging technologies and infectious disease control, it is about pathogen genomics.
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But the use of pathogen genomics in routine public health practice was really facilitated by this much larger phenomenon, which is the digitization of the health system in the United States and health systems generally, and this is something that really took off in the 2010s and began with the process of digitizing electronic health record systems, which was a very fascinating policy battle in the United States, but then also electronic laboratory reporting infrastructures to public health, and so what I've tried to document in my work over time is how basically this digital base has been developed that enables different forms of interoperability between the domain of clinical care and the domain of public health practice.
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Since pathogen genomics became an object of interest for me when I was actually studying this process in regard to changes in HIV care, surveillance and prevention during the 2010s, and so I was doing research, I did over two years of ethnographic field work in Atlanta, georgia, in the HIV safety net from 2016 to early 2019.
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From 2016 to early 2019.
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And I was studying there there were these multiple transitions happening during that time in regard to HIV and how it was managed by public health institutions.
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One of them was the introduction of knowledge about undetectable viral loads becoming undetectable, making one untransmissible, or U equals U in the kind of public-facing messaging, and when operationalized as a public health strategy, this is often called treatment as prevention, and so this was taking off in the period when I was doing my field work and what I was paying attention to most closely was the ways in which public health systems.
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Then they had a much greater incentive to monitor in real time who was virally suppressed in their jurisdictions, because there was just a real reorientation, this time in HIV care and public health, around bringing viral loads down and then in identifying.
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During this period in the US there were a series of programs rolled out that were focused on identifying people who had fallen out of care based on whether or not the public health department had received blood work from them.
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Identifying people who had fallen out of care and then reaching back out to them to bring them back into care.
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So this was a very new set of programs in the United States.
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Historically, like these, hiv surveillance systems and clinical care and prevention infrastructures were quite separate from one another, that's really interesting actually seeing how the actual clinical aspect of HIV care was translated into a public health outreach in ways that a lot of people maybe didn't know about.
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So that's really cool.
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Yeah, and this is as part of this.
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In 2018, in all health departments, cdc began requiring the use of HIV genetic sequence data, which are generally ordered in the clinical context to monitor drug resistance, the potential emergence of drug resistance in a patient and CDC standpoint was using phylogenetic analysis to monitor the growth of emerging transmission clusters of HIV.
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This is what actually brought me to thinking about pathogen genomics and pathogen phylogenetics.
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I was initially interested in the digitization of health systems and how that facilitated different uses of data such as this, and how that facilitated different uses of data such as this.
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I had a question about this.
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So do you think this kind of reorientation has?
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Has it increased the people that were retaining in care?
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Because I know and I know this because this is just in my dissertation, we were just talking about it, so I just found the stat so the CDC says that for every 100 people living with HIV in the United States, only 54 are retained within the care system and about 66 achieve viral suppression, which is certainly, with as wealthy of a country as we are, we could do better.
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So do you think that it changed like how we're maintaining people in care and like the level of care that people were receiving?
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Yeah, so this is actually quite a fraught question.
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So this is sort of where I think we can think about where the science and the public health practice meet politics in this regard, because what I discovered when I was doing my research is that these programs and the reorientation of the US National HIV-AIDS Strategy so it was the first National HIV-AIDS Strategy for the United States came out in 2010.
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It was this big moment and it has been updated since then.
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But if we situate ourselves in the period of the mid-2010s, there was a great deal of optimism around technology digital technology generally to solve social problems which has really waned in recent years right this sort of what we call an STS techno-optimism right around digital technologies to solve social problems.
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There's a great deal more of societal skepticism of that.
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But if we position ourselves in the 2010s, you had a few things going on in regard to HIV, because you had the convergence of a very optimistic sort of civil society liberal progressive coalition that had coalesced around Obama.
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You had the digitization of the health system, being able to use data in new ways to link people to care, and then, at this time, you also had the emergence of treatment as prevention.
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So this was a moment of huge optimism that maybe we can use data in new ways and this new knowledge about HIV transmission to end the epidemic by bringing people into care, whether the programs have worked generally, what the evaluation papers in this space has found and this program initially it was called Data to Care and it's still called that when the technical literature and the people who do this if you want to look up these programs, that's what they'll be called, the evaluation literature has generally found that it's very expensive to conduct these investigations to bring people into care and relink them.
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Their effectiveness is debated but in partly because a lot of it is done using cost-benefit analyses for bringing people back into care, have been of this other process that was mixed up in HIV in this time, which was the integration, right of care, prevention and surveillance, where they really put a lot of effort in.
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I'm thinking about a group in Washington and Seattle, for example, to try and keep people retained in care after a successful relinkage intervention, and it was just really hard and a lot of people ended up still falling out of care, not being able to be retained, because people were having trouble remaining in care.
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In the United States we don't have a health care system that's designed to keep people in care.
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We have a very bad health care system, but also you're generally talking, these are folks who are having a hard time in other ways too, maybe with housing, food security, things like this substance use, things like this substance use.
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But in any case, I'm going to answer your question.
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But it's a long way around the barn, because what happened was there was all this optimism around moving HIV toward a treatment as prevention paradigm, and then things really changed after 2016 and into 2017.
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So you had HIV.
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Civil society was really on board with these uses of data and then there was a switch that happened sometime between 2017 and 2018, when actually that coincided with the use of molecular HIV data or HIV genetic sequence data in these programs, doing this cluster modeling.
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So at this time, the organized networks of people living with HIV and others in civil society there had been a switchover from the Obama to the Trump administration began to really voice a different set of concerns around privacy, concerns, confidentiality, concerns around criminalization, because, for example, hiv genetic sequence data and phylogenetic analysis can be used potentially to infer who may have infected whom in a data set.
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So there's a lot of concern around this and then this led to a real backlash during this period to these programs.
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That was led by segments of HIV civil society, which is ongoing to this day, in fact, and I've written a couple of papers tracking this controversy.
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And to answer your question, do I think that these programs have worked?
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I think that we're still at like less than 70%, certainly probably around 65%, viral suppression in this country.
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I would say probably not at a population level, but also even if we look at their implementation.
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Their evidence of effectiveness is very much debated and I always like to say, if that, if someone could walk down the street and get into care easily, there wouldn't necessarily be the need for all of these programs and advanced data uses.
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But that's not the healthcare system we have.
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So they remain an object of a lot of controversy.
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Yeah, Stephen.
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I was wondering can you give us some examples how pathogen genomics and pathogen phylogenetics is in their life or where they run into this during their life?
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For people that probably don't know exactly what this is, Can you give some very 30,000 feet examples?
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Yeah, sure.
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So where an everyday person might run into pathogen genomics, there might be a couple of different ways.
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If you're a person living with HIV and you, for example, are having problems keeping your viral load suppressed with your care provider, your care provider might order a drug resistance test for you.
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That is, the provider ordering an HIV genetic sequence Because HIV is a reportable condition to public health.
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Right, it goes to public health so that they can use it in surveillance programs and also in prevention outreach programs.
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The data that the lab generate will be reported back to the provider and to public health.
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In the clinical context, these data can then determine okay, this patient or this person is having trouble remaining virally suppressed because they have a kind of HIV that's resistant to this particular medication, so we're going to change their medication.
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The guidelines change around this with some frequency.
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So what providers do?
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It's generally in line with the guidelines, but the guidelines change a lot.
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They're like updated every year.
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So a lot of providers will order an HIV genotype test or a drug resistance test for our patient upon enrolling or re-enrolling in care.
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And so an everyday person who is not living with HIV.
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where they might run into this, it's hard to actually say Would you say it could potentially be used in, like the analysis of bacteria, let's say an antibiotic resistance when it comes down to it, used all the time.
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Yes.
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To see what antibiotic your particular infection might be susceptible to, especially if they're concerned.
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You have an antibiotic resistant infection, used all the time.
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Yes, and this is where I was going to go, which was in media coverage, is where I think people might see some of this.
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So if they're hearing, for example, about the emergence of antimicrobial resistant or antibiotic resistant, let's say, gonorrhea is, there are waves of media discourse about this almost every year.
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Cdc has been warning about the coming pan-resistant gonorrhea since the 1970s.
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That has its own fascinating history, but also, for example, in the H5N1, avian flu is being covered in the media a lot right now, when the news articles are basically talking about how pathogens, how bacteria or viruses, mutate and acquire new characteristics.
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This is pathogen genomics in use.
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And so yeah.
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So they will be framed in the media often as like the potential emergence of a super bug or a species crossover, for example.
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I know that's of big interest here in infectious science, but these are media discourses that happen that I think most people would be familiar with and also, I would say, linking it back to HIV the public communication of emerging HIV clusters that have been identified through phylogenetic analysis.
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Public health departments will often work with local media to communicate about these.
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One very well-known example is Scott County, indiana, in 2015, where there were several hundred new cases of HIV because of very distinct practices of needle sharing that were going on in that community.
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But now the health department wants to communicate about growing HIV clusters.
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So if you're hearing this term HIV clusters, this is probably a reference to phylogenetics being used in public health practice growing HIV clusters.
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So if you're hearing this term HIV clusters, this is probably a reference to phylogenetics being used in public health practice.
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Steven, I'm going to throw you a curve ball right.
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This is a One Health podcast, so are you aware of any relevance in veterinary medicine, animal medicine or environmental sciences where, like pathogen, genomics plays a role, or whether this is being discussed, or is this a purely human topic?
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No, so pathogen genomics are very much used in One Health.
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One Health is not my area, my primary area.
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I will be very clear in saying, however, there is one project I have waiting in the wings that I need to pursue further, which intersects a lot with One Health, with One Health meaning the whole thing human-animal environment, right, and this is the concept of a resistome.
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Which is this very interesting concept that essentially is a conceptual abstraction used to describe the drug resistance profile of all of the bugs that might be in a particular area and they so.
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The technology generally is metagenomic sequencing sequencing everything inside of a sample to see what's there.
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You can generate what scientists who are working in this area call a resistome profile, which will give you the resistance profile of all the bugs in that sample.
00:23:23.675 --> 00:23:32.753
What I find very interesting about this concept is that it scales in these sort of incredible ways, and so one is.
00:23:32.814 --> 00:23:52.655
For example, and when I first became aware of the concept is there was a paper about the specific resistome profiles for bacterial antimicrobial resistance among men who have sex with men who were taking PrEP for HIV, which is an HIV prophylactic medication.
00:23:52.655 --> 00:24:07.021
In the paper, they had done throat swabs and determined that gay men who were taking PrEP had a distinct resistome profile in their oropharynxes this is when I first came across this term in their oropharynxes.
00:24:07.021 --> 00:24:08.205
This is when I first came across this term.
00:24:08.205 --> 00:24:22.935
However, the term resistome is also used, for example, to describe in other papers I've seen, like an entire region where there's like maybe a lot of agriculture accounting for, like water samples from agricultural runoff, sampling from animals and maybe people there, or like a city block.
00:24:22.935 --> 00:24:34.650
So there are some papers where they would have gone around a city block, swabbing various surfaces and then sequencing it all to come up with a resistome, and so that is the closest to One Health that I think my work has gotten on.
00:24:34.650 --> 00:24:37.387
That's a project I want to pursue, but I haven't quite yet.
00:24:37.528 --> 00:24:51.983
And antimicrobial resistance is such a big topic in One Health right, because we have the overuse in human medicine, but we also have the overuse in veterinary medicine, so your resistome projects is probably extremely irrelevant and from my perspective.
00:24:51.983 --> 00:25:02.374
Also coming back to the veterinary medicine right, the phylogenetics is often used as a public health response to fight highly transmissible animal diseases.
00:25:02.374 --> 00:25:21.351
Right, like we see this now with avian influenza, where they track where did this come from this virus, what migratory bird brought this to this agricultural farm or to this, and they can trace it and they can almost like trace the history of where it came from and what farm got infected next, and so on.
00:25:21.351 --> 00:25:25.289
But I think it's way less controversial than it is in human disease.
00:25:25.289 --> 00:25:26.505
Would you agree or disagree?
00:25:26.644 --> 00:25:31.825
I would agree, but I would also say even making some of the claims that you're making there right.
00:25:31.825 --> 00:26:05.256
So, like this idea that you can use pathogen phylogenetics in the H5N1 avian influenza context to track which bird or which flock brought this strain of H5N1, and strain might be the wrong word to use but this subtype, let's say, of H5N1 to another area, you're making transmission, what are called transmission directionality inferences, when you're doing that right, and one of the things I'm interested in in pathogen phylogenetics is where making these kinds of inferences becomes acceptable and when it is problematized it's not acceptable.
00:26:05.416 --> 00:26:11.393
Yeah, that's fair, yeah, so in HIV, for example, and programs that have been rolled out in the United States.
00:26:11.393 --> 00:26:17.292
There's a lot of concern about inferring who may have infected whom and inferring directionality.
00:26:17.292 --> 00:26:18.884
Cdc says they don't do that.
00:26:18.884 --> 00:26:27.945
Activists claim if you're mapping clusters and doing investigations based on the combination of the phylogenetic data and the behavioral data, how can you not be doing that?
00:26:27.945 --> 00:26:29.507
And this is the heart of the controversy?
00:26:29.507 --> 00:26:45.017
But right, if you're talking about birds or, honestly, if you're talking about other pathogens, for example TB, in certain contexts for TB affecting humans, those directionality inferences are made and they're much less controversial.
00:26:45.017 --> 00:26:47.887
So it depends a lot by pathogen and context.
00:26:48.400 --> 00:26:50.327
And I think also depends who you're talking.
00:26:50.327 --> 00:27:05.453
To A vet, that might not be a controversial statement to say here's the farm where it originated, but to a farmer who owns that farm, who then might be responsible for everyone around them in a radius to have their flocks potentially destroyed to prevent the spread of avian flu.
00:27:05.453 --> 00:27:16.526
That might be a very sensitive topic and that definitely happens in the United States and we've certainly seen that where entire flocks have been culled and, as someone who grew up on a farm, there's strong concerns about biosecurity.
00:27:16.526 --> 00:27:22.785
But also, who is the source zero of something like that happening, because it can be devastating for that particular community.
00:27:22.785 --> 00:27:26.853
So, yeah, I think it all depends on who you're asking, on whether or not it's considered.
00:27:26.873 --> 00:27:29.964
But I think this brings back then the question of science literacy, though.
00:27:29.964 --> 00:27:43.570
Do the farmers understand why certain decisions were made based on phylogenetics or not, because often the veterinary health response is so strong and there's this response of culling instead of not what we normally do with humans, right?
00:27:43.570 --> 00:27:45.272
Do they understand what was implemented based on, maybe, right?
00:27:45.272 --> 00:27:48.567
Do they understand what was implemented based on, maybe some sequencing?
00:27:48.747 --> 00:27:50.852
Yeah, I think farmers understand what happened.
00:27:50.852 --> 00:27:56.744
But I think when you're saying there's this like line of transmission, then you always have someone who might be at fault potentially.
00:27:57.025 --> 00:27:59.211
And I think that's what's sensitive more than like.
00:27:59.230 --> 00:28:05.423
yes, certainly, people can lose their livelihoods and there's entire issues with that, and that's an interesting conversation within the ag community.
00:28:05.423 --> 00:28:11.367
But I think the idea of here's where this originated in this local area, at this farm or something that's what's more sensitive.
00:28:11.587 --> 00:28:16.671
Have there been culls of like flocks based on phylogenetic studies?
00:28:17.113 --> 00:28:18.758
Based on phylogenetic studies?
00:28:18.758 --> 00:28:22.964
I'm not sure based on phylogenetic studies, but certainly if it's found in a local area.
00:28:22.964 --> 00:28:30.875
So, like I grew up on a farm, and certainly if you had avian flu, everyone around you who has poultry, their flocks will be cold.
00:28:30.875 --> 00:28:32.864
So there's still this assignment of fall.
00:28:32.864 --> 00:28:35.852
I don't know that it's ever been down to phylogenetics.
00:28:35.852 --> 00:28:37.844
I've never gotten into it or had to deal with it.
00:28:37.844 --> 00:28:38.464
I'm like a person.
00:28:38.500 --> 00:28:40.267
I think it's just more based on epidemic.
00:28:40.267 --> 00:28:41.531
Radius.
00:28:41.531 --> 00:28:42.275
Yeah.
00:28:42.316 --> 00:28:42.857
Like location.
00:28:43.451 --> 00:28:46.234
To connect this back to the conversation about HIV.
00:28:46.234 --> 00:28:55.077
The fundamental question in the controversy about HIV phylogenetics there are these specific issues, right there's is directionality being inferred.
00:28:55.077 --> 00:29:01.542
Can directionality, epistemologically speaking, methodologically speaking, ever in fact be definitively inferred?
00:29:01.542 --> 00:29:27.262
That kind of thing, these questions exist, but they are specific manifestations of a deeper, underlying issue, which is the introduction of pathogen genomics and, in the HIV context, specifically pathogen phylogenetics to inform public health action for reasons other than surveillance, but to inform actual outreach to people, to link them to care.
00:29:27.262 --> 00:29:45.740
Does adding these technologies in some way fundamentally transform the work of public health and what public health agencies are doing in mapping clusters, or is it an additional tool that is in the public health toolkit that informs routine practice?
00:29:46.750 --> 00:29:55.701
And I think that's a really good segue into our next question that we have for you, dr Moldrum, which is you've written about the role of media in bringing pathogen genomics into the public eye.
00:29:55.701 --> 00:30:10.176
But, as you've previously stated, there is still a gap that persists in using this information to better the public health when it comes down to it, and also better the care for the people who do have these diseases and these infections.
00:30:10.176 --> 00:30:14.144
How would you recommend that we bridge this gap?
00:30:15.269 --> 00:30:22.099
Yeah, that's a really big question and so for me, my studies in pathogen genomics, pathogen phylogenetics, have been in three areas.